FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001609174

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001609174
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1880986
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA21240.11291950072993633No Hit
ACCATACTCCCCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCG19370.10297790626830822No Hit
GAATAACGCCGCCGCATCGCCGGTCGGCATCGTTTATGGTCGGAACTACG19130.10170197970638803No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)