FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001610021

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001610021
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2939117
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT243010.8268129509645243No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT158510.5393116367943162No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT115070.39151214463391554No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT62050.2111178289261707No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT56020.19060146295639133No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT44160.1502492075000757No Hit
GTCCTAAGAGATAGGGGAACTCCGTTTCAAAGTGTGCGCTTGTTCGCACG31750.10802564171484155No Hit
ACATTATTCTATGGACTAGAGGCTGATCACCTTGGGGACCTGATGCGGAT30020.10213952013478879No Hit
GTTATAAGCTGTAAAGGAGAAAAGATAACTCTTCCCAGGGCCCACACCGG29650.10088063864078906No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)