FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001610604

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001610604
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3610125
Sequences flagged as poor quality0
Sequence length151
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA43890.12157473771683806No Hit
GAATAACGCCGCCGCATCGCCGGTCGGCATCGTTTATGGTCGGAACTACG41770.11570236487656244No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT36250.10041203559433538No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)