FastQCFastQC Report
Thu 9 May 2024
EGAF00001610826

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001610826
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3148749
Total Bases475.4 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT46190.1466931787830659No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA37250.11830095063150477No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)