FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001612946

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001612946
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1848433
Sequences flagged as poor quality0
Sequence length151
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGT32650.1766361020388621No Hit
GTATAAAGGTACAGGAATATTAACCTGTTTCCCATCAGCTACGCATCTCT26000.140659683093734No Hit
GTACATGGGGGATCAAGTGAATAAGTGCATATGGTGGATGCCTAGGCGAT25310.13692679150393874No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT25250.1366021922352609No Hit
CCTTTATACAATGCGATGTGGGGACGGAGAAGGTTAGGTCAGCCGGGTGT23900.1292987086900093No Hit
GAATACATAGGCGTAAGAGGCGAACCAGGGGAACTGAAACATCTAAGTAC23180.12540351746587516No Hit
GTATAAGACCGTACCGCAAACCGACACAGGTGGGTAGGATGAGAATTCTA21380.11566553940553972No Hit
GTTATGACTAGGGGGATCATAAGATCTTACCAACTCATTGCAAACTCCGA20290.10976865269122547No Hit
GTCTTATACAACTGAAGCTTAGTGGCTTTTCTTGGAAGCTTGGTATCAAT19120.10343896695200745No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)