FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001615237

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001615237
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2746489
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT227800.8294225827957075No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT135650.4939033070949856No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT102920.37473297726661203No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT49980.1819777905536851No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT41080.14957278183164033No Hit
ATCCTAAGAGATAGGGAAACTCCGTTTTAAAGCGCACGATTCTTCGTGCC36600.13326104710413914No Hit
ATGTAGATAAGGGAAGTCGGCAAAATAGATCCGTAACTTCGGGAAAAGGA34940.1272169668256454No Hit
TATCTACATTGTTCTATCAACTAGAGGCTGTTCACCTTGGAGACCTGCTG34040.12394005583128131No Hit
GTCAGGAACGCACCGGACCCATCAAAATTGATGAGCTCTACCCGCCATTG33760.1229205724108125No Hit
ACTAGAGGCTGTTCACCTTGGAGACCTGCTGCGGTTATGAGTACGACCAG32560.1185513577516604No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT31460.1145462443141043No Hit
GTTCTAAGTTGGTTGTTAATCGTACGCCAGACGCCGTGAGGCAGCTGAAC31370.1142185532146679No Hit
ATCGAAAGGGAATCCGGTTAAGATTCCGGAACCAGGATGTGGATCCTTGA29300.1066816579276305No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)