FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001615246

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001615246
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2893055
Sequences flagged as poor quality0
Sequence length151
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT36780.12713204553663862No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC34250.11838696464464035No Hit
GTATACGGGCGTCGGCATCCAGACCGTCGGCTGATCGTGGTTTTACTAGG30140.10418052888728352No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)