FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001616398

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001616398
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3044087
Sequences flagged as poor quality0
Sequence length151
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT36200.11891907162968733No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC34910.11468134780641946No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT31350.1029865440770911No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)