FastQCFastQC Report
Sun 4 Sep 2022
EGAF00001617141

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001617141
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1107362
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA23670.2137512394320918No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT16530.14927367924852034No Hit
ATACATATGTATACATATGTATAGATCGGAAGAGCACACGTCTGAACTCC16370.14782880395028908Illumina Multiplexing PCR Primer 2.01 (100% over 28bp)
ATCTCGAGGGCGCGCCGGATCCTTTTTTTTTTTTTTTTTTTTTTTTTTTT14730.13301883214341834No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)