FastQCFastQC Report
Sun 4 Sep 2022
EGAF00001617147

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001617147
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1010013
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT47340.46870683842683214No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA43890.43454886224236716No Hit
ACATATATGTACATATATGTAGATCGGAAGAGCACACGTCTGAACTCCAG14180.14039423254948202Illumina Multiplexing PCR Primer 2.01 (100% over 30bp)
ATCTCGAGGGCGCGCCGGATCCTTTTTTTTTTTTTTTTTTTTTTTTTTTT11890.11772125705312704No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)