FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001617156

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001617156
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1522763
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATCTCGAGGGCGCGCCGGATCCTTTTTTTTTTTTTTTTTTTTTTTTTT81590.5358023540104402No Hit
ATATGGATCCGGCGCGCCGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTT31540.2071234985352284No Hit
CGTATATACGTATATACGTATATACGAGATCGGAAGAGCGTCGTGTAGGG29420.19320143712449014Illumina Single End PCR Primer 1 (100% over 24bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA15570.10224834724773323No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)