FastQCFastQC Report
Sat 10 Sep 2022
EGAF00001617731

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001617731
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1774714
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTATATACGTATATACGTATATACGAGATCGGAAGAGCACACGTCTGAA40810.22995254446631966Illumina Multiplexing PCR Primer 2.01 (100% over 24bp)
ATATACGTATATACGTATATAGATCGGAAGAGCACACGTCTGAACTCCAG25350.14283991674151442Illumina Multiplexing PCR Primer 2.01 (100% over 30bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)