FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001618325

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001618325
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1351408
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT208901.545795200265205No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA37840.2800042622213277No Hit
ATATGGATCCGGCGCGCCGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTT14580.1078874773569492No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)