FastQCFastQC Report
Sat 3 Sep 2022
EGAF00001618908

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001618908
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences616677
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATCTCGAGGGCGCGCCGGATCCTTTTTTTTTTTTTTTTTTTTTTTTTT30420.49328903137298774No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA14410.23367176009483084No Hit
ATATGGATCCGGCGCGCCGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTT6360.10313340695372131No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)