FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001619346

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001619346
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1733343
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATCTCGAGGGCGCGCCGGATCCTTTTTTTTTTTTTTTTTTTTTTTTTT108170.624054212005356No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA55300.31903668229542564No Hit
ATATGGATCCGGCGCGCCGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTT19050.10990323323196852No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)