FastQCFastQC Report
Sun 4 Sep 2022
EGAF00001619351

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001619351
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1076145
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA25760.23937294695417438No Hit
ATATCTCGAGGGCGCGCCGGATCCTTTTTTTTTTTTTTTTTTTTTTTTTT14050.13055861431312696No Hit
ATATACGTAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGGAGA13160.12228835333528475TruSeq Adapter, Index 6 (97% over 36bp)
ACGTATATAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGGAGA12830.11922185207383763TruSeq Adapter, Index 6 (97% over 36bp)
ATCTCGAGGGCGCGCCGGATCCTTTTTTTTTTTTTTTTTTTTTTTTTTTT12330.114575638041342No Hit
ATACGTATAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGGAGA11140.10351764864400244TruSeq Adapter, Index 6 (97% over 36bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)