FastQCFastQC Report
Sun 4 Sep 2022
EGAF00001619468

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001619468
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1140656
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30720.2693187078312831No Hit
ATATCTCGAGGGCGCGCCGGATCCTTTTTTTTTTTTTTTTTTTTTTTTTT28850.2529246328428553No Hit
ATACATATGTATACATATGTATAGATCGGAAGAGCGTCGTGTAGGGAAAG21500.18848802794181593Illumina Single End PCR Primer 1 (100% over 28bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)