FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001619879

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001619879
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3453309
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT284800.8247162359348671No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT172770.5003027530985498No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT119540.34616074032181887No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT105910.3066913502382787No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT79840.23119854029859474No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT63730.1845476324302285No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT56320.16308995227476025No Hit
GTATAAAGGTACAGGAATATTAACCTGTTTCCCATCAGCTACGCATCTCT56150.1625976708137036No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC55230.15993355937739714No Hit
ATATAAATATAGAGCATCCGAAGCTTCGGTTACGTGCTTAGCCCCGTTAC51700.1497114796272213No Hit
GTTATGACTAGGGGGATCATAAGATCTTACCAACTCATTGCAAACTCCGA46390.13433492340245254No Hit
AGTCATAACAGTGCTCTACCCCCGAGAATGATATACGAGGCACTACCTAA40400.11698924133345728No Hit
CCTTTATACAATGCGATGTGGGGACGGAGAAGGTTAGGTCAGCCGGGTGT40210.116439044406394No Hit
ATATTTATATAGATGCATGGTAGGAGAGCGTTCTGTAGGCCTGCGAAGGT38610.11180580712586102No Hit
AGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTA36110.10456637387502828No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)