FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001619880

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001619880
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3453309
Sequences flagged as poor quality0
Sequence length151
%GC46

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT62530.1810727044698288No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT54660.1582829685962073No Hit
GTATAAAGGTACAGGAATATTAACCTGTTTCCCATCAGCTACGCATCTCT51060.14785818471500814No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC46700.13523261312555582No Hit
GTTATGACTAGGGGGATCATAAGATCTTACCAACTCATTGCAAACTCCGA41010.11875566304666046No Hit
ATATAAATATAGAGCATCCGAAGCTTCGGTTACGTGCTTAGCCCCGTTAC39960.11571510108131071No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT36040.10436366974400496No Hit
ATATTTATATAGATGCATGGTAGGAGAGCGTTCTGTAGGCCTGCGAAGGT35660.10326327588987838No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)