FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001619898

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001619898
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3385843
Sequences flagged as poor quality0
Sequence length151
%GC44

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATAATACCATGCTAATATATTCAAAGCTAAAAAGCTTGTTTTGAACAC138200.4081701366542985No Hit
GTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGT83840.24761927827131971No Hit
TTATTAAGTAGAGGAAAAGAAAGTAAAAACGATTCCTATAGTAACGGCGA82210.24280511529920318No Hit
GAATACATAGGCGTAAGAGGCGAACCAGGGGAACTGAAACATCTAAGTAC70730.2088992312992658No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT57870.17091755288121746No Hit
GTATTATAGAATATGACGAATTCAGGTCATATAAAGTTCTGGGGGCCGCA50260.14844161409728684No Hit
ACCTAAAACCATTAACGAGCAACAATAAGAGGGCAAGTCTGGTGCCAGCA49140.14513372297534174No Hit
CTCTAATTTATTCAAAGTTATCTCACTTCAGAAAACCAGAAGTCTGCGTA48580.14347977741436918No Hit
TCCCAAATACTGTTCCAATTTGGACCCAGCTCTGGTATTTTTCGTCACTA48130.1421507140171591No Hit
TTCCAGAGCGTTCCGCTAATCTCAAAGCCACTTAAGGGCTAGTCCCCGTT47740.14099885907291035No Hit
CCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCGATTTCATGAC46570.13754329424016412No Hit
GTATTTGGGATGAGTACAACCTAAAACCATTAACGAGCAACAATAAGAGG42170.12454800768966547No Hit
GTCCTACTCGATTTCATGACTAAGAGATTTTCGCGTACAGGGCTATCACC41420.12233290202764864No Hit
GTACATGGGGGTCAAGTGAAGAAGCGCATACGGTGGATGCCTTGGCAGTC39120.1155399113307971No Hit
GTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCT38470.11362015309038251No Hit
AATATATTCAAAGCTAAAAAGCTTGTTTTGAACACTCTAATTTATTCAAA37260.11004644928899539No Hit
GTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGT36870.10889459434474665No Hit
ATCTTACGCTGAATACATAGGCGTAAGAGGCGAACCAGGGGAACTGAAAC35570.1050550778639175No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)