FastQCFastQC Report
Sun 4 Sep 2022
EGAF00001620488

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001620488
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1181424
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATCTCGAGGGCGCGCCGGATCCTTTTTTTTTTTTTTTTTTTTTTTTTT67330.5699054700090739No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA60910.515564268205149No Hit
ATATGGATCCGGCGCGCCGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTT16430.13906946193745853No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)