FastQCFastQC Report
Wed 8 May 2024
EGAF00001620992

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001620992
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2606340
Total Bases393.5 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC36960.1418080526715624No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT33280.12768863617179646No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)