FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001620996

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001620996
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3451511
Sequences flagged as poor quality0
Sequence length151
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGATTACGAGTATTTAGCCTTGGAGGATGGTCCCCCCATGTTCAGACA170710.49459497593952334No Hit
CTATAATACCATGCTAATATATTCAAAGCTAAAAAGCTTGTTTTGAACAC162020.4694175971045725No Hit
GTCGATTACGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACA130820.3790224049698813No Hit
GTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGT90050.2609002260169531No Hit
CATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCT77890.22566927933881709No Hit
GTATTATAGAATATGACGAATTCAGGTCATATAAAGTTCTGGGGGCCGCA62370.18070346581540664No Hit
GTATTTGGGATGAGTACAACCTAAAACCATTAACGAGCAACAATAAGAGG53050.15370079944696685No Hit
GTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACA52890.15323723435909664No Hit
GTCCCGAGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCGGGTCGG52470.15202037600343732No Hit
CCCTTAGTAGTGGCGAGCGAACGGGGACTAGCCCTTAAGTGGCTTTGAGA46180.13379647348653967No Hit
GTACCCTGAGGAAAAGAAATCAACCGAGATTCCCTTAGTAGTGGCGAGCG43890.12716169816639727No Hit
GTACATGGGGGATCAAGTGAATAAGTGCATATGGTGGATGCCTAGGCGAT43560.12620559517266494No Hit
ACCTAAAACCATTAACGAGCAACAATAAGAGGGCAAGTCTGGTGCCAGCA43020.124641063001103No Hit
AATATATTCAAAGCTAAAAAGCTTGTTTTGAACACTCTAATTTATTCAAA42160.1221494006538006No Hit
CTCTAATTTATTCAAAGTTATCTCACTTCAGAAAACCAGAAGTCTGCGTA40960.11867266249477401No Hit
GAATACATAGGCGTAAGAGGCGAACCAGGGGAACTGAAACATCTAAGTAC40610.11765861386505794No Hit
GTACTGGTTCACTATCGGTCGATTACGAGTATTTAGCCTTGGAGGATGGT40370.11696326623325262No Hit
TCCCAAATACTGTTCCAATTTGGACCCAGCTCTGGTATTTTTCGTCACTA39480.11438468543197458No Hit
GTATATCATATTACTATTAATACTAGCTTACTTTCGTTAAGCATACACCA39260.11374728343615305No Hit
GTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGT38480.11148740363278575No Hit
GTATAAAGGTACAGGAATATTAACCTGTTTCCCATCAGCTACGCATCTCT38310.11099486572692366No Hit
GTTATGACTAGGGGGATCATAAGATCTTACCAACTCATTGCAAACTCCGA37600.1089377956494996No Hit
CTTTGAGACCTTGCGGCCCCCAGAACTTTATATGACCTGAATTCGTCATA35130.1017815096055032No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)