FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001621014

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001621014
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3981751
Sequences flagged as poor quality0
Sequence length151
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC73890.18557162414224296No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT61430.15427885872320996No Hit
CCCATATTCAGACAGGATACCACGTGTCCCGCCCTACTCATCGAGCTCAC48900.12281029125126106No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)