FastQCFastQC Report
Fri 10 May 2024
EGAF00001621544

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001621544
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3810285
Total Bases575.3 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT65390.17161445928585395No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC47290.12411145098070091No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT38200.10025496780424561No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)