FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001621572

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001621572
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3196076
Sequences flagged as poor quality0
Sequence length151
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTACTACACTGGTGCTGTCCACCAATAGTAATTATTAATGACTTGAAATA75710.23688422928616215No Hit
CTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAAT72410.22655906805720516No Hit
TCATAATGCTATGTTTTAATTAAACAGTCGGATTCCCCTTGTTCGTATCA69840.21851795764556287No Hit
CTACTAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTTC68830.2153578325421548No Hit
GTGTTTAACCTATCACTTAGGATCGACTCACCCATATTCAATTACTGTTT63930.2000265325355217No Hit
GTGTAATAACTCACCTGCCGAATGAATTAGTCCTGAAAATGGATGACGCT62070.1942068962064732No Hit
CCCTATGAATGGGTGAACAATCCAACACTTTATGAATTCTGCTTCATAAT57150.1788130194651191No Hit
GTCTAAACCCAGCTCACGTTCCCTATGAATGGGTGAACAATCCAACACTT47670.14915164720738808No Hit
CCCATATTCAATTACTGTTTTTATGGAACCTTTCTCCACTTCAGTCTTCA46560.14567863843037526No Hit
CAGTAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAATA44650.13970256026452438No Hit
GATCTGTACTAATCACAATTTCATATAAAATCACTCTTACATTTCAACAT43800.13704304903888392No Hit
ATCCAACACTTTATGAATTCTGCTTCATAATGATAGGAAGAGCCGACATC43790.13701176067152346No Hit
TAATAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGC42620.1333510216903478No Hit
TTATTAGATAGGGAGTTTGGCTGGGGCGGCACATTTACTAAATGATAACG41790.1307540871994283No Hit
GTCTAGGACTACGACGGTATCTAATCATCTTCGATCCCCTAACTTTCGTT40680.12728107842241548No Hit
TTCATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTT39370.12318230229819316No Hit
GTCCCTACCTACTATTTAGCGAAACTACAGCCAGGGGAACGGGCCTGGAG38630.12086696311351797No Hit
CCATAAAAGGTATTAATTCATAGAAACAGTAGGACGGTGGTCATGGAAGT37920.11864548903092417No Hit
ATCTTATGTAGAACAAAAAGGTAAAAGTTTATTTGATTTTTATTTTCAGT37320.11676818698929563No Hit
TAATAATAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGC37320.11676818698929563No Hit
TTATTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCGTCCTACT37140.11620499637680706No Hit
CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCAGAGAAT36830.11523505698863232No Hit
GCATTATGAAGCCTATGATCCAGATGGATCACTGACATAATGTGATTTCT33740.10556695147424529No Hit
TCCTACAAGTGTTAACGTTACTACACTGGTGCTGTCCACCAATAGTAATT32630.10209394269723249No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)