FastQCFastQC Report
Sun 4 Sep 2022
EGAF00001621575

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001621575
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1143016
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA26600.23271765224633775No Hit
ATCTCGAGGGCGCGCCGGATCCTTTTTTTTTTTTTTTTTTTTTTTTTTTT14750.12904456280576998No Hit
ATATGGATCCGGCGCGCCGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTT14400.12598248843410767No Hit
ATATCTCGAGGGCGCGCCGGATCCTTTTTTTTTTTTTTTTTTTTTTTTTT14390.1258950005949173No Hit
ACATATATGTACATATATGTAGATCGGAAGAGCACACGTCTGAACTCCAG11550.10104845426485717Illumina Multiplexing PCR Primer 2.01 (100% over 30bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11480.10043603939052471No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)