FastQCFastQC Report
Sat 18 Mar 2023
EGAF00001643846

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001643846
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61969945
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTTGC1220850.19700679095325965No Hit
CAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGC1011220.16317910238584205No Hit
AAAAGAGGCAAAATGATTAAAGAAATTTATGTTTTTTAGACAGGGTGTTG1002660.16179778762107985No Hit
CTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGT899640.14517359987974815No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)