FastQCFastQC Report
Wed 15 Mar 2023
EGAF00001643850

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001643850
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58995413
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA911230.15445777114908918No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT809380.1371937170776311No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC804650.13639195982914806No Hit
CAGAAGCTTATGTTGTTTATGCGGGGAAACGCCATATCGGGGGCACCGAT680890.11541405769970624No Hit
CAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGCTGC669950.11355967624126981No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC637280.10802195757151492No Hit
GTCAGAAGCTTATGTTGTTTATGCGGGGAAACGCCATATCGGGGGCACCG611450.10364365107504206No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)