FastQCFastQC Report
Thu 16 Mar 2023
EGAF00001643855

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001643855
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63920069
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAGGGTATGAAGTGATTTGTCACAATTTTCAGCTGACTCATCAGCAA962530.15058337937651475No Hit
CACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTTTCT914540.14307556520316023No Hit
CTCGGAGCTCCGGGCACTCAGACATCATGAGTTGGTCCTTGCACCCCCGG881440.13789722285812925No Hit
CTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTTTCTCTTTA772430.12084311110490197No Hit
CTTTTATCAGCTGTTTGACTTCTGATGTTTTGTTTTCAACTTGATGTAAG674670.10554900996743292No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)