FastQCFastQC Report
Fri 24 Mar 2023
EGAF00001643858

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001643858
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57820085
Sequences flagged as poor quality0
Sequence length101
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTTGC706200.12213748907494688No Hit
CTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTTTCTCTTTA617560.10680717608768649No Hit
CACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTTTTCT608860.10530250863519139No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)