FastQCFastQC Report
Thu 16 Mar 2023
EGAF00001643873

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001643873
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64831948
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGGCTTTACACCAACGAAAAAGAAAAACAGATGAATAAGCTTTTGATC1758550.27124744115354976No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC1227310.18930635864897966No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCC1082610.16698711567327884No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC989780.1526685577919084No Hit
CAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCCAAGGCAA952260.14688128760221736No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC942780.1454190455606856No Hit
CAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCCAAGGCAA865170.1334480956827026No Hit
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG774730.11949818321053689No Hit
CTTTAGTGTTGTGTATGGCTATCATTTGTTTTGAGGTTAGTTTGATTAGT734370.11327285738815067No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT731380.11281166501429203No Hit
CAGGGTGTTGGCTTTACACCAACGAAAAAGAAAAACAGATGAATAAGCTT668890.10317289864558751No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)