FastQCFastQC Report
Thu 16 Mar 2023
EGAF00001643874

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001643874
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64831948
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGGCTTTACACCAACGAAAAAGAAAAACAGATGAATAAGCTTTTGATC1706820.263268350350972No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC1211020.18679370855862606No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCC1065170.16429708390067194No Hit
CAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCCAAGGCAA939500.14491312215391092No Hit
CTTTAGTGTTGTGTATGGCTATCATTTGTTTTGAGGTTAGTTTGATTAGT934110.14408174192143663No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC875880.13510005900177485No Hit
CAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCCAAGGCAA843780.13014879639279078No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC821450.12670450685825452No Hit
GTAGGTTTGTCGCCTCTACCTATAAATCTTCCCACTATTTTGCTACATAG692560.10682387640118418No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT669770.10330863419374658No Hit
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG659720.10175847253579362No Hit
CAGGGTGTTGGCTTTACACCAACGAAAAAGAAAAACAGATGAATAAGCTT653690.10082837554102184No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)