FastQCFastQC Report
Fri 24 Mar 2023
EGAF00001643882

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001643882
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56027194
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGGCTTTACACCAACGAAAAAGAAAAACAGATGAATAAGCTTTTGATC581890.10385849414482545No Hit
CTTTAGTGTTGTGTATGGCTATCATTTGTTTTGAGGTTAGTTTGATTAGT579190.10337658530605691No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)