FastQCFastQC Report
Fri 9 Sep 2022
EGAF00001648546

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001648546
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences871727
Sequences flagged as poor quality0
Sequence length35-301
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGTAGGTGAACCTGCGGAAGGATCATTGTCGATGCCTAAACATCAAAC20437023.444266381562116No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTATCTTCAGTGGTTTTCCACTG14189816.277802568923526No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAAGATTTGGGCAGGCCA13049914.970168412817317No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAGTGAATAACAGGACGTTCAA9743511.177237827897955No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAAGATTCAAGGGCCAGC312623.586214491463497No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTCATAATTTATTATAAATGTTC297973.418157290069024No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTACCGAGTGAGGGCCCTCTGGG116331.3344774224040326No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAACGGAGCCCGGAGGGTGAGG50030.5739182106324572No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTACCACACCTAAAACTTTCCAC39000.4473877716303384No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAGTGAAGATTTGGGCAGGCCA27860.3195954696825956No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTGTCGATGCCTAAACATCAAAC23750.27244768144155224No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTATCTGCAGTGGTTTTCCACTG19560.2243821746946005No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAACGGAGCCCGGAGGGCGAGG19430.22289088212249938No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTATCTTCAGTGGTTTTCCACTG15400.1766608123873644No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTATCGATGCCTAAACATCAAAC13980.16037130890749055No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTGTCGATGCCTAAACATCCAAC13900.15945359040158213No Hit
TCCGTAGGTGAACCTGCCCATTGTGGAGCGGCCGGTGCATCGATGAAGAACGCAGC12120.13903435364512057No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTGTCGATGCCTCAACATCAAAC11950.13708420182006523No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAATAACAGGACGTTCAA11330.12997188339927523No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTGTCGATGCCTAAACCTCAAAC11180.12825116120069702No Hit
TCCGTAGGTGAACCTTCGGAAGGATCATTGTCGATGCCTAAACATCAAAC10800.12389199829763217No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTGTCGATGCCTAAACATCAACC10430.11964755020780589No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAAGCTTTGGGCAGGCCA10150.11643553543712654No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAAGATTTTGGCAGGCCA9640.11058507996196056No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTATCTTCAGTTGTTTTCCACTG9270.10634063187213427No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTGTCGATTCCTAAACATCAAAC8920.10232561340878508No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)