FastQCFastQC Report
Sun 4 Sep 2022
EGAF00001648550

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001648550
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences765550
Sequences flagged as poor quality0
Sequence length35-301
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGTAGGTGAACCTGCGGAAGGATCATTAGTGAATAACAGGACGTTCAA18351423.97152374110117No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTACCGAGTGCGGACCTCCGGGT9822112.830122134413166No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTATTGATTTGACTATACTTTTG8157910.656260205081313No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAAGATTCAAGGGCCAGC764049.98027561883613No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTACCGATTCTAAAGGATGTGCT556757.272549147671609No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAAGATTTGGGCAGGCCA546467.138135980667494No Hit
TCCGTAGGTGAACCTGCGGAGGGATCATTACAAGTGACCCCGGTCTAACC151971.9851087453464829No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTACCACACCTAAAACTTTCCAC141871.8531774541179542No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTGTCGATGCCTAAAACATCAAA62210.8126183789432435No Hit
TCCGTAGGTGAACCTTCGGAAGGATCATTACCGAGTGCGGACCTCCGGGT32500.42453138266605706No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAATAACAGGACGTTCAA21560.28162758800862125No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAGTGAATAACAGGACGTTCCA14000.18287505714845537No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAGTGAATAACAGGACGCTCAA13490.17621318006661876No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAGTGAAGATTCAAGGGCCAGC12920.16876755273986022No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTACCGAGTTCGGACCTCCGGGT11540.15074129710665535No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTACCGAGTGCGGACCTCCGGGT10390.13571941741231794No Hit
TCCGTAGGTGAACCCTCTGGGACACCTGTTGTGCCAGTAGAGCCTCCGGG9010.11769316177911306No Hit
TCCGTAGGTGAACCTGCGGAAGGCCCCCCAGGCCCTGTGAGCATCGATGAAGAACGCAGC8960.11704003657501143No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAGTGAATAACAGGACGTTCAC8790.1148194108810659No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTATTGATTTGACTATACTTTTG8440.11024753445235452No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTATTGATTTTACTATACTTTTG8190.10698190843184639No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)