FastQCFastQC Report
Thu 1 Sep 2022
EGAF00001648565

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001648565
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57220
Sequences flagged as poor quality0
Sequence length35-301
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGTTT2268439.64348130024467No Hit
GCTGCGTTCTTCATCGATGGGAGAACCAAGAGATCCGTTGTCGAAAGTTG1307722.85389723872772No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTT55599.71513456833275No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTG47498.29954561342188No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGCTGAAAGTTT17413.0426424327158337No Hit
GCTGCGTTCTTCATCGATGCACGAGCCGAGTGATCCACCGCTAAGAGTCG7931.3858790632645928No Hit
GCTGCGTTCTTCATCCCTCTGTGTAGCACATGGACTGCCCACACTCAGGG3830.669346382383782No Hit
GCTGCGTTCTTCATCGATGCTGTAAAGGTAACACTAGAAGCACCTCGCAGGTTCACCTACGGA3330.5819643481300245No Hit
GCTGCGTTCTTCATCGATGCTCACACGTGTACTGAGCAGTGAGAGGGGAA2650.4631247815449144No Hit
GCTGCGTTCTTCCCAGCACAGACAAGGAGAGCATCGCCAGGGCGGAGCTG2340.40894792030758476No Hit
GCTGCGTTCTTCATCGATGCCTCCAATCACAGCCAGGACTGCCATGAGGC1990.34778049632995456No Hit
GCTGCGTTCTTCATCGATTGGAGAACCAAGAGATCCGTTGTCGAAAGTTG1950.340789933589654No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1560.27263194687172315No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTCGAAAGTTG1160.20272631946871722No Hit
GCTGCGTTCTTCATCGATGCACCGGCCGCTCCACAATGGGCAGGTTCACCTACGGA950.16602586508213912No Hit
GCTGCGCTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGTTT880.15379238028661307No Hit
GCTGCGTTCTTCATCGATGTGAGAACCAAGAGATCCGTTGTCGAAAGTTG660.1153442852149598No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTCGAAAGTTT620.10835372247465921No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)