FastQCFastQC Report
Thu 1 Sep 2022
EGAF00001648566

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001648566
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72598
Sequences flagged as poor quality0
Sequence length35-301
%GC49

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGTAGGTGAACCTGCGGAGGGATCATTACTGAGTGTAAAAACTCCCAA2094128.845147249235513No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAAGATTTGGGCAGGCCA1526121.021240254552467No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTATCTTCAGTGGTTTTCCACTG761810.493402022094273No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAGTGAAAGTTTCGGGCCTGCC34524.754951927050332No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAGTGATTGGCCCTCTGTGGCC28463.920218187828866No Hit
TCCGTAGGTGAACCTGCGGAGGGATCATTATCTTCAGTGGTTTTCCACTG24553.381635857737128No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTATCATCAGTGGTTTTCCACTG24443.3664839251770022No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTATCTTCAGTTGTTTTCCACTG20702.851318218132731No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAAGATTCAAGGGCCAGC18372.5303727375409792No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTACCGAGTGCGGACCCTCTGGG12581.7328301055125486No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTATGAATAAGTAGTTTGCTACT12331.6983938951486266No Hit
TCCGTAGGTGAACCTGCGGAGGGGTCATTACAAGTGACCCCGGTTTACCA11801.6253891291771123No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAGTGAAGATTTGGGCAGGCCA7351.012424584699303No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTATTGATTTGACTATACTTTTG6670.9187580925094356No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAACGGAGCCCGGAGGGCGAGG4390.604699853990468No Hit
TCCGTAGGTGAACCTGCGGAGGGATCATTACTGAGTGTACAAACTCCCAA3830.527562742775283No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAAGATTTGGGCCGGCCA3470.4779745998512355No Hit
TCCGTAGGTGAACCTGCGCCTGCCCACTCCACCTCCAAGGCCCCTCACTC1900.26171519876580623No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTACTGAGTGTAAAAACTCCCAA1870.2575828535221356No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAAGATTTTGGCAGGCCA1170.16116146450315436No Hit
TCCGTAGGTGAACCTGCCCATTGTGGAGCGGCCGGTCATCGATGAAGAACGCAGC1000.1377448414556875No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)