FastQCFastQC Report
Thu 1 Sep 2022
EGAF00001648567

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001648567
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72598
Sequences flagged as poor quality0
Sequence length35-301
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGCTGAAAGTTT2151829.639934984434834No Hit
GCTGCGTTCTTCATCGATGGGAGAACCAAGAGATCCGTTGTCGAAAGTTG1830525.214193228463593No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTG1138415.680872751315464No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTCGAAAGTTG37055.103446375933221No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGTTT28613.940879914047219No Hit
GCTGCGTTCTTCATCGATGCAAGAACCAAGAGATCCGTTGTTGAAAGTTG23283.206699909088405No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTTAAAGTTG22093.0427835477561365No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTT12641.74109479599989No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCGTTGTTGAAAGTTT11991.651560649053693No Hit
GCTGCGTTCTTCATCGATGTGAGAGCCAAGAGATCCGTTGTTGATAGTTA6860.9449296123860161No Hit
GCTGCGTTCTTCATCGATGCACGAGCCGAGTGATCCACCGCTAAGAGTCG2870.39532769497782305No Hit
GCTGCGTTCTTCATCGATGCCACGCCAGCCCTCCGGACCCGACAAAGGCA1880.25896030193669245No Hit
GCTGCGTTCTTCATCGATGACCGGCCGCTCCACAATGGGCAGGTTCACCTACGGA1040.14325463511391498No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTCGAAAGTTG960.13223504779745998No Hit
GCTGCGTTCTTCATCGATGTGAGAACCAAGAGATCCGTTGTCGAAAGTTG900.12397035731011874No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGCTGAAAGTTG870.11983801206644812No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)