FastQCFastQC Report
Thu 1 Sep 2022
EGAF00001648570

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001648570
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences102759
Sequences flagged as poor quality0
Sequence length35-301
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGTAGGTGAACCTGCGGAAGGATCATTAAAGAGTAAGGGTGCTCAGCG2138220.807909769460583No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTACTGATTTGCTTAATTGCACC2001319.475666364989927No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTACCTAGAGTTTGTGGGCTTTG98399.574830428478284No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTATTGATTTGACTATACTTTTG52735.131424011522105No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAGTGATTTGCCTTCGGGCTAA48304.700318220301871No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAAAAATTATCGTGTTCTTTGG42474.1329713212468No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTACTAATTTGCTTAATTGCACC41484.036629394992166No Hit
TCCGTAGGTGAACCTGCGGAAGGGTCATTACTGATTTGCTTAATTGCACC39333.827401979388666No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAATGCTTAGGGGAGATC38393.7359258069852763No Hit
TCCGTAGGTGAACCTGCGGAAAGATCATTAGTGAATTGCTCTTTGAGCGT37573.656127443824872No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAGTGAAGATTTGGGCAGGCCA36163.518913185219786No Hit
TCCGTAGGTGAACCTGCGGACTCACCGAGCGAGTGGTGAGGGACAGCTGA34833.3894841327766914No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAACACGTTATCCACGTATCAC8930.8690236378322093No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAACGGAGCCCGGAGGGCGAGG8300.8077151393065328No Hit
TCCGTAGGTGAACCTGCAGAAGGATCATTAGTGAATGCTTAGGGGAAATA7390.7191584192138888No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAACGAGTAAGGGTGCTCAGCG2730.2656701602779319No Hit
TCCGTAGGTGAACCTGCCGCTGGATCATTTTTGGATCAAACCTTGAACGG1790.1741939878745414No Hit
TCCGTAGGTGAACCTGCTCCAGAAACTGAAGTTTGAAATGGAGCTCCTAA1630.15862357555056003No Hit
TCCGTAGGTGAACCTGCGGAGGGATCATTACAAGTGACCCCGGCTACGGC1410.13721425860508568No Hit
TCCGTAGGTGAACCTGCCGCTGGATCATTTTTGGATCAAACCTTGAACGT1230.11969754474060668No Hit
TCCGTAGGTGAACCTGCCTTGCATCCCAAGTATGAAGCCGACTTGATCGT1120.10899288626786947No Hit
TCCGTAGGTGAACCTGCGGAAGGATCATTAGTGAATGCTTAGGGGAGATC1050.10218083087612764No Hit
TCCGTAGGTGAACCTGCGGACTCACCGAGCGAGTGGTGAGGGACCGCTGA1030.10023452933562997No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)