FastQCFastQC Report
Wed 13 Sep 2023
EGAF00001662698

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001662698
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences79189033
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATGCC2968330.37484104648682853TruSeq Adapter, Index 7 (100% over 51bp)
CTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTT2693900.34018599519961307No Hit
CCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTCCC1385700.17498635196113582No Hit
CTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTCCCAAGCAACCCGAC986470.12457154262762622No Hit
CTACAACGTAGTACGTGTCGTGTAGTACGATGTCTAGTGATGAGTTTGCTA930430.11749480512029992No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)