FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001671058

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001671058
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7942378
Sequences flagged as poor quality0
Sequence length101
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTCAACAATCTCGTAT655610.8254580681000073TruSeq Adapter, Index 13 (97% over 40bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTCAACAATCTCGTA118290.14893524332385086TruSeq Adapter, Index 13 (97% over 40bp)
GCCAGACTTAGGGCTAGGATGATGATTAATAAGAGGGATGACATAACTAT80780.1017075742302872No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)