FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001671066

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001671066
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5665365
Sequences flagged as poor quality0
Sequence length101
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTTCCGTATCTCGTAT401460.7086215980788528TruSeq Adapter, Index 14 (97% over 44bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTTCCGTATCTCGTA270790.4779744994364882TruSeq Adapter, Index 14 (97% over 44bp)
TTTTTTTTGAAAAAGTCATGGAGGCCATGGGGTTGGCTTGAAACCAACTT77450.1367078731908712No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)