FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001671152

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001671152
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7645921
Sequences flagged as poor quality0
Sequence length101
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGAAGTGAGCTACGACGTAGTACGTGTCGTGTAGTACNATGTCTAGTG178220.23309160531478157No Hit
CTGGCATTGTATTAGCAAACTCATCACTAGACATCGTACNACACGACACG163420.21373487902896196No Hit
CAGAGTTTGAAGTCCTTGAGAGAGGATTATGATGCGACTNTGAGTGCGTT125830.16457141003680265No Hit
CTAGGGTGTAGCCTGAGAATAGGGGAAATCAGTGAATGANGCCTCCTATG117850.1541344724853945No Hit
TTTCTTTTCACCGTAGGTGGCCTGACTGGCATTGTATTANCAAACTCATC96260.12589719407249958No Hit
GTCGTAGCTCACTTCCACTATGTCCTATCAATAGGAGCTNTATTTGCCAT89760.11739592914967341No Hit
AGCAAACTCATCACTAGACATCGTACTACACGACACGTANTACGTCGTAG88590.11586570146356469No Hit
CAAACTCATCACTAGACATCGTACTACACGACACGTACTNCGTCGTAGCT77950.10194978472835385No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)