FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001671170

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001671170
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7001891
Sequences flagged as poor quality0
Sequence length101
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCGCACATCTCGTA237890.3397510758165187TruSeq Adapter, Index 18 (97% over 40bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCGCACATCTCGTAT110120.15727179986092327TruSeq Adapter, Index 18 (97% over 40bp)
GCCAGACTTAGGGCTAGGATGATGATTAATAAGAGGGATGACATAACTAT70960.101344051199883No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)