FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001671218

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001671218
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8504758
Sequences flagged as poor quality0
Sequence length101
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGCATTGTATTAGCAAACTCATCGCTAGACATCGTACTACACGACACG184670.21713727774499875No Hit
GGCAAATACAGCCCCTATTGATAGGACATAGTGGAAGTGAGCTACAACGT155570.18292113661552745No Hit
CAAACTCATCGCTAGACATCGTACTACACGACACGTACTACGTTGTAGCT131780.15494855938287722No Hit
GCGAAATGGATTTTGGCGTAGGTTTGGTCTAGGGTGTAGCCTGAGAATAG90870.10684607369192632No Hit
AGCAAACTCATCGCTAGACATCGTACTACACGACACGTACTACGTTGTAG86920.10220161467263383No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)