FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001671290

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001671290
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11295771
Sequences flagged as poor quality0
Sequence length101
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGCATTGTATTAGCAAACTCATCGCTAGACATCGTACTACACGACACG206150.182501929261845No Hit
GGCAAATACAGCCCCTATTGATAGGACATAGTGGAAGTGAGCTACAACGT179790.15916576212460398No Hit
CAAACTCATCGCTAGACATCGTACTACACGACACGTACTACGTTGTAGCT149380.13224418235815863No Hit
GTTTGGTCTAGGGTGTAGCCTGAGAATAGGGGAAATCAGTGAATGAAGCC119660.10593345066928145No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)