FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001671441

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001671441
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10089763
Sequences flagged as poor quality0
Sequence length101
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGGATTAAGGCGACAGCGATTTCTAGGATAGTCAGTAGAATTAGAATT238650.23652686391147146No Hit
GGGAAGGTTAATGGTTGATATTGCTAGGGCGGTGCTTCCAATTAGGTGCA128640.12749556159049524No Hit
CTGACCGCTAACATTACTGCAGGCCACCTACTCATGCACCTAATTGGAAG118750.11769354741038021No Hit
CGCCTGACCGCTAACATTACTGCAGGCCACCTACTCATGCACCTAATTGG102490.1015782035712831No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)