FastQCFastQC Report
Thu 5 Jan 2023
EGAF00001676710

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001676710
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34790956
Sequences flagged as poor quality0
Sequence length75
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGCTTTAGCTATTGGCAGCTATGGTGTTCTTAATCCATTTCACATAGTTGTAGACCTTGGTGTAGACTCCAG1035900.29774979451556316No Hit
GGGGGCTTTAGCTGTTGGCAGCTATGGTGTTCTTAATCCATTTCACATAGTTGTAGACCTTGGTGTAGACTCCAG936640.26921939138435863No Hit
GTTCAGAGTCTTCCTGTCGTATTGGGGGTGGCGGATGATCTTGGCTGCATTGATGAACTGCTCATTCCCCTCCAG772480.222034714998921No Hit
GGCAGAGAGATGGTGGACACGCGGGCGTTGATTACTGCACGTGAGGAGAGCTTGATTAACATGATGTCATTGTTC655810.1885001377944314No Hit
CTCCCATTATCATACCAATTTGTAAAAGGCTGGCCATCCACTACATTGCGGAAAATAACCATGTTCCTTATTTGG644500.18524929294843176No Hit
GGGCAGAGAGATGGTGGACACGCGGGCGTTGATTACTGCACGTGAGGAGAGCTTGATTAACATGATGTCATTGTT640360.18405932852204465No Hit
GTCCAGTAGCGCAGGAAGTTGGTTCTCAGGCTCCGCTTCATGGAGCTGCTGCCCATCTTCTTGGTGATCTCCAGG622070.17880221515039713No Hit
GTCACTTTATTGGTATAGAGACTGAAGAGATACTGGGGGCTTTAGCTATTGGCAGCTATGGTGTTCTTAATCCAT592380.170268388140872No Hit
GTCCTGGGCCCAGGACTCGGTGTAGACATCAAAGGTCGTCTTGGCGCCTCTGAGCCCCTTGGTGATTGTGAACTC559580.1608406506564522No Hit
GTCGTATTGGGGGTGGCGGATGATCTTGGCTGCATTGATGAACTGCTCATTCCCCTCCAGGACTTCGATGTTGTG545400.15676487878056583No Hit
GCTGCATTGATGAACTGCTCATTCCCCTCCAGGACTTCGATGTTGTGCTCTCCCAGTCTCACCTGGATGCGGGAC516320.14840638469376927No Hit
CTCCATTCCACTTGCGAATAATTGTGCCGAGTTTTGCACCATACTTGAATTCTGTCACCCGGCCATTACCAAAGT514400.14785451713370568No Hit
GTCACTTTATTGGTATAGAGACTGAAGAGATACTGGGGGCTTTAGCTGTTGGCAGCTATGGTGTTCTTAATCCAT505690.14535099294195883No Hit
CTCCACTTCCAGTTTTACATTTACCATCATTGAAATCCCATCCAGAATATGGGACTGCTGGAAAGTCCCTACTTC494650.14217775447159314No Hit
CTCGTTGATTGTCATGGTTATCCACAAAGACAAGCGCTCTGTCAGAAGGTACGAAACCCCAACCTTCTCCCCAGT482130.13857911809034507No Hit
CCCAGTTCTTTAAGTAAGACATCTTCTCTCCATTCCACTTGCGAATAATTGTGCCGAGTTTTGCACCATACTTGA468720.1347246681005259No Hit
CCCACTTGTTGTACTTCTCATAACTGTGTCCTGTTGCACGAACCCGGCTATCAAACTGAGCCTCCACCACATTTC465470.1337905172827099No Hit
CTTGTTGATGGCAGGCATGTCGATGCTGGCGAAGATGTGGCCGTCCATGTTGTTGGTGCCTGCTATATAGTCGAT437600.12577981473116173No Hit
GGGTAGATCATCATTTGGGAGTACGAGTGGATTGTCAGATATGCCTTGATGGAAGAGAGTTTGTTGCGGATGAAA428070.1230405971023044No Hit
CCAGAAATGACATCACAGTATGTGCCAGCAGGAAGACCAGTTTGCAAAGTTAAAGAAAATGACCAGTCATCATTG409940.11782947269399553No Hit
GTCATTGTTCAGAGTCTTCCTGTCGTATTGGGGGTGGCGGATGATCTTGGCTGCATTGATGAACTGCTCATTCCC408260.1173465885789399No Hit
CTCCATTCCACTTGCGAATAACTGTGCCGAGTTTTGCACCATACTTGAATTCTGTCACCCGGCCATTACCAAAGT400870.11522247333473677No Hit
GCCCAACCCAATCATTAACATCGTTTCCATTTTGAAACTGTCTTGGCCAACGGTAGCTTGACATTACTCGTGTAA399660.11487468179948836No Hit
GGTCACTTTATTGGTATAGAGACTGAAGAGATACTGGGGGCTTTAGCTATTGGCAGCTATGGTGTTCTTAATCCA380710.10942786395406899No Hit
GGTAGATCATCATTTGGGAGTACGAGTGGATTGTCAGATATGCCTTGATGGAAGAGAGTTTGTTGCGGATGAAAT369790.10628911720620728No Hit
GGTGGACACGCGGGCGTTGATTACTGCACGTGAGGAGAGCTTGATTAACATGATGTCATTGTTCAGAGTCTTCCT369600.10623450531224266No Hit
CCAGAAGGTAAGAATAGAGGCTCCTCCAGCCCCATGTCCTCGTTGATTGTCATGGTTATCCACAAAGACAAGCGC365980.10519400501670607No Hit
GTCACTTTATTGGTATAGAGACTGCAGAGGGACCAGGGGCTTTAGCTGTTGGCAGCTATGGTGTCCTTAATCCAG365090.1049381914081349No Hit
GGGTCCTGGGCCCAGGACTCGGTGTAGACATCAAAGGTCGTCTTGGCGCCTCTGAGCCCCTTGGTGATTGTGAAC355850.10228232877532886No Hit
CTCCACTATAATCTTGGATGCTCCCACTCTAGGTAAAGTTGGGTTGATCACATTGTTATACCAAATAAATTTAAC354500.10189429689715915No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)