FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001676750

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001676750
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24233756
Sequences flagged as poor quality0
Sequence length75
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCAACCCAATCATTAACATCGTTTCCATTTTGAAACTGTCTTGGCCAACGGTAGCTTGACATTACTCGTGTAA665100.27445188438804125No Hit
GTTCAGAGTCTTCCTGTCGTATTGGGGGTGGCGGATGATCTTGGCTGCATTGATGAACTGCTCATTCCCCTCCAG594820.24545101469206834No Hit
GGGGGCTTTAGCTATTGGCAGCTATGGTGTTCTTAATCCATTTCACATAGTTGTAGACCTTGGTGTAGACTCCAG591200.24395723056714774No Hit
CTCCATTCCACTTGCGAATAATTGTGCCGAGTTTTGCACCATACTTGAATTCTGTCACCCGGCCATTACCAAAGT523090.21585180605103063No Hit
CTCGTTGATTGTCATGGTTATCCACAAAGACAAGCGCTCTGTCAGAAGGTACGAAACCCCAACCTTCTCCCCAGT521640.21525346710596574No Hit
CTCCATTCCACTTGCGAATAACTGTGCCGAGTTTTGCACCATACTTGAATTCTGTCACCCGGCCATTACCAAAGT485470.20032800528320907No Hit
CTCCACTTCCAGTTTTACATTTACCATCATTGAAATCCCATCCAGAATATGGGACTGCTGGAAAGTCCCTACTTC484090.19975855166652667No Hit
CCAGAAATGACATCACAGTATGTGCCAGCAGGAAGACCAGTTTGCAAAGTTAAAGAAAATGACCAGTCATCATTG470220.1940351301713197No Hit
CCAGAAGGTAAGAATAGAGGCTCCTCCAGCCCCATGTCCTCGTTGATTGTCATGGTTATCCACAAAGACAAGCGC385610.15912102110791246No Hit
GTCGTATTGGGGGTGGCGGATGATCTTGGCTGCATTGATGAACTGCTCATTCCCCTCCAGGACTTCGATGTTGTG379190.1564718238476941No Hit
CTCCATTATTATTTGGTGGCCCAACCCAATCATTAACATCGTTTCCATTTTGAAACTGTCTTGGCCAACGGTAGC375830.15508532808533684No Hit
CTCCCATTATCATACCAATTTGTAAAAGGCTGGCCATCCACTACATTGCGGAAAATAACCATGTTCCTTATTTGG371470.15328618477465894No Hit
GTCATTGTTCAGAGTCTTCCTGTCGTATTGGGGGTGGCGGATGATCTTGGCTGCATTGATGAACTGCTCATTCCC363610.1500427750448589No Hit
CCCAGTTCTTTAAGTAAGACATCTTCTCTCCATTCCACTTGCGAATAATTGTGCCGAGTTTTGCACCATACTTGA356720.14719963343692988No Hit
GGGGGCTTTAGCTGTTGGCAGCTATGGTGTTCTTAATCCATTTCACATAGTTGTAGACCTTGGTGTAGACTCCAG334940.13821216983450688No Hit
CCCACTTGTTGTACTTCTCATAACTGTGTCCTGTTGCACGAACCCGGCTATCAAACTGAGCCTCCACCACATTTC323180.13335943466625644No Hit
GTCCAGTAGCGCAGGAAGTTGGTTCTCAGGCTCCGCTTCATGGAGCTGCTGCCCATCTTCTTGGTGATCTCCAGG322140.132930281216003No Hit
GGGCAGAGAGATGGTGGACACGCGGGCGTTGATTACTGCACGTGAGGAGAGCTTGATTAACATGATGTCATTGTT295580.12197036233260745No Hit
GGCAGAGAGATGGTGGACACGCGGGCGTTGATTACTGCACGTGAGGAGAGCTTGATTAACATGATGTCATTGTTC291950.12047245173220363No Hit
CCCCAACATTGTTACATCTAGTCACCATGTTTCTAAATTCATCTTCATTTCCAGATCTTGTGCATAATTTATAGC291050.12010106893871507No Hit
CCCAGTTCTTTAAGTAAGACATCTTCTCTCCATTCCACTTGCGAATAACTGTGCCGAGTTTTGCACCATACTTGA285410.11777373676618681No Hit
CTAGCATCCCAGAAGGTAAGAATAGAGGCTCCTCCAGCCCCATGTCCTCGTTGATTGTCATGGTTATCCACAAAG274530.11328413144045851No Hit
GTCACTTTATTGGTATAGAGACTGAAGAGATACTGGGGGCTTTAGCTATTGGCAGCTATGGTGTTCTTAATCCAT273910.11302828996049973No Hit
CTCTGTTTCCTCTCCCAAAAGCCACTTGGTTGCTCCCATTATCATACCAATTTGTAAAAGGCTGGCCATCCACTA271140.11188525625165163No Hit
CTCCACTATAATCTTGGATGCTCCCACTCTAGGTAAAGTTGGGTTGATCACATTGTTATACCAAATAAATTTAAC269300.11112598476274169No Hit
GCCTAGCATCCCAGAAGGTAAGAATAGAGGCTCCTCCAGCCCCATGTCCTCGTTGATTGTCATGGTTATCCACAA249910.10312474880080497No Hit
CTGTCGTATTGGGGGTGGCGGATGATCTTGGCTGCATTGATGAACTGCTCATTCCCCTCCAGGACTTCGATGTTG242860.10021558358514462No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)